Package: InteRD 0.1.1

Chixiang Chen

InteRD: The Integrated and Robust Deconvolution

We developed the Integrated and Robust Deconvolution algorithm to infer cell-type proportions from target bulk RNA-seq data. This package is able to effectively integrate deconvolution results from multiple scRNA-seq datasets and calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Moreover, the proposed algorithm is robust to inaccurate external information imposed in the deconvolution system.

Authors:Chixiang Chen [cre, aut], Yuk Yee Leung [aut], Matei Lonita [aut], Li-San Wang [aut], Mingyao Li [aut]

InteRD_0.1.1.tar.gz
InteRD_0.1.1.zip(r-4.5)InteRD_0.1.1.zip(r-4.4)InteRD_0.1.1.zip(r-4.3)
InteRD_0.1.1.tgz(r-4.4-any)InteRD_0.1.1.tgz(r-4.3-any)
InteRD_0.1.1.tar.gz(r-4.5-noble)InteRD_0.1.1.tar.gz(r-4.4-noble)
InteRD_0.1.1.tgz(r-4.4-emscripten)InteRD_0.1.1.tgz(r-4.3-emscripten)
InteRD.pdf |InteRD.html✨
InteRD/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/chencxxy28/interd/issues

On CRAN:

7 exports 0.63 score 68 dependencies 14 scripts 233 downloads

Last updated 2 years agofrom:335984b6b8. Checks:OK: 7. Indexed: yes.

Exports:evaluategenerateBulkInteRD.predict.propInteRD1InteRD2pop.ct.prop.scRNARef_free

Dependencies:askpassBiobaseBiocGenericsbootcellrangerclassclicolorspacecowplotcpp11crayoncurldata.tableDescToolse1071Exactexpmfansifarverggplot2gldgluegtablehmshttrisobandjsonlitelabelinglatticelifecyclelimSolvelmomlpSolvemagrittrMASSMatrixmgcvmimemunsellmvtnormnlmeopensslpheatmappillarpkgconfigplyrprettyunitsprogressproxyquadprogR6RColorBrewerRcppreadxlrematchreshape2rlangrootSolverstudioapiscalesstringistringrsystibbleutf8vctrsviridisLitewithr